Table 6 |
|||
|
Quality assessment of the filtered putative SNPs identified from the catfish ESTs based on the number of sequences per contig and the sequence frequencies of the minor alleles |
|||
|
Number of sequences in the contig |
Number of contigs with SNPs |
Number of SNPs |
SNP rate (per kb) |
|
|
|||
|
2 (1:1) |
16,567 |
96,565 |
5.2 |
|
3 (2:1) |
8,374 |
86,686 |
10.8 |
|
4 (3:1) |
5,136 |
71,155 |
13.0 |
|
Subtotal |
30,077 |
254,406 |
8.0 |
|
4 (2:2) |
1,528 |
5,008 |
0.9 |
|
5-6 (2) |
3,099 |
13,725 |
2.0 |
|
7-8 (3) |
805 |
2,659 |
0.7 |
|
9-12 (4) |
730 |
2,376 |
0.5 |
|
13-20 (5) |
629 |
2,307 |
0.6 |
|
21-30 (5) |
628 |
2,864 |
1.3 |
|
31-50 (6) |
730 |
5,052 |
3.0 |
|
51-100 (6) |
542 |
6,379 |
6.0 |
|
101-500 (6) |
316 |
6,580 |
13.4 |
|
>500 |
31 |
1,644 |
15.0 |
|
Subtotal |
9,038 |
48,594 |
1.6 |
|
Total |
39,115 |
303,000 |
7.7 |
|
|
|||
|
Wang et al. Genome Biology 2010 11:R8 doi:10.1186/gb-2010-11-1-r8 |
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