Table 4

The numbers of hotspot-SNP pairs in which the SNP-derived allele is cold versus hot

SNP inside hotspot

0 <D 50 kb

50 kb <D 100 kb

D > 100 kb


q < 0.01

34/31 (1.097)

596/354 (1.684)

141/118 (1.195)

92/92 (1.000)

0.01 ≤ q < 0.05

55/48 (1.146)

1,066/673 (1.584)

402/271 (1.483)

386/277 (1.394)

0.05 ≤ q < 0.5

437/375 (1.165)

11,227/8,030 (1.398)

8,081/6,187 (1.306)

10,182/7,764 (1.311)

q ≥ 0.5

229/162 (1.414)

6,399/4,877 (1.312)

7,034/5,217 (1.348)

10,164/7,676 (1.324)


Ratios are given in parentheses. The pairs are classified by LDsplit q-values and the physical distance D between a hotspot and a SNP.

Zheng et al. Genome Biology 2010 11:R103   doi:10.1186/gb-2010-11-10-r103

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