Table 3

Two states at a fully informative for one parent locus built from the previous state

Parents

Children

# Rec



p0

p1

c0

c1

c2

c3

c4


Prev

<a onClick="popup('http://genomebiology.com/2010/11/10/R108/mathml/M11','MathML',630,470);return false;" target="_blank" href="http://genomebiology.com/2010/11/10/R108/mathml/M11">View MathML</a>

〈0, 1〉

〈1, 1〉

〈1, 1〉

〈0, 0〉

〈1, 1〉

0

State

hap

〈a, g〉

〈a, a〉

〈g, a〉

〈a, a〉

〈a, a〉

a, a〉

〈a, a〉

a

<a onClick="popup('http://genomebiology.com/2010/11/10/R108/mathml/M12','MathML',630,470);return false;" target="_blank" href="http://genomebiology.com/2010/11/10/R108/mathml/M12">View MathML</a>

1, 1〉

0, 1〉

0, 1〉 〈

0, 0〉

0, 1〉

4

State

hap

〈g, a〉

〈a, a〉

〈g, a〉

〈a, a〉

〈a, a〉 〈

a, a〉

〈a, a〉

b

<a onClick="popup('http://genomebiology.com/2010/11/10/R108/mathml/M13','MathML',630,470);return false;" target="_blank" href="http://genomebiology.com/2010/11/10/R108/mathml/M13">View MathML</a>

〈0, 1〉

〈1, 1〉

〈1, 1〉 〈

1, 0〉

〈1, 1〉

1


An example locus with one heterozygous and one homozygous parent that shows one state at the previous locus and the two states Hapi builds based on this previous state. This example is from the real dataset discussed in Results. The rows labeled <a onClick="popup('http://genomebiology.com/2010/11/10/R108/mathml/M14','MathML',630,470);return false;" target="_blank" href="http://genomebiology.com/2010/11/10/R108/mathml/M14">View MathML</a> show the states' inheritance vectors and the rows labeled hap give haplotype assignments of the alleles. Hapi copies the inheritance vector values corresponding to the homozygous parent from the previous state to states a and b. Recombinations result from differing inheritance vector values from the previous state; these differences appear in bold and the states' total number of recombinations appear in the right-most column. Note that the heterozygous parent's inheritance vector values in the two states are exactly opposite each other and are therefore equivalently labeled.

Williams et al. Genome Biology 2010 11:R108   doi:10.1186/gb-2010-11-10-r108

Open Data