Table 1 |
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|
Genetic diversity in continental groups and populations |
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|
nInd |
S |
Sp |
θ |
π (π10-5) |
H (π10-5) |
Hap Het |
Tajima's D |
P |
|
|
|
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|
Continent |
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|
India |
152 |
533 |
237 |
84.70 (82.72-86.68) |
83.68 (79.20-88.17) |
77.53 |
0.89 |
-0.04 |
0.97 |
|
Africa |
152 |
656 |
416 |
104.25 (101.82-106.68) |
85.28 (80.71-89.86) |
78.03 |
0.95 |
-0.57 |
0.57 |
|
Europe |
152 |
535 |
205 |
85.02 (83.03-87.01) |
74.64 (70.63-78.65) |
67.95 |
0.88 |
-0.38 |
0.70 |
|
East Asia |
152 |
436 |
186 |
69.29 (67.66-70.92) |
73.61 (69.66-77.57) |
73.10 |
0.90 |
0.19 |
0.85 |
|
Population |
|||||||||
|
Brahmin |
23 |
287 |
16 |
65.30 (59.72-70.88) |
75.08 (64.51-85.64) |
60.02 |
0.79 |
0.55 |
0.58 |
|
GIH |
24 |
282 |
47 |
63.54 (58.27-68.81) |
72.41 (62.45-82.38) |
60.96 |
0.87 |
0.51 |
0.61 |
|
Irula |
23 |
292 |
20 |
66.44 (60.76-72.12) |
82.77 (71.13-94.40) |
95.12 |
0.89 |
0.90 |
0.37 |
|
Mala/Madiga |
24 |
342 |
46 |
77.06 (70.69-83.43) |
84.46 (72.85-96.07) |
89.33 |
0.87 |
0.35 |
0.73 |
|
Yadava |
22 |
317 |
28 |
72.87 (66.45-79.29) |
88.94 (76.15-101.73) |
92.82 |
0.95 |
0.81 |
0.42 |
|
LWK |
24 |
359 |
85 |
80.89 (74.21-87.57) |
82.51 (71.17-93.86) |
85.81 |
0.96 |
0.07 |
0.94 |
|
YRI |
24 |
349 |
91 |
78.64 (72.14-85.14) |
82.03 (70.75-93.31) |
76.86 |
0.95 |
0.16 |
0.88 |
|
CEU |
24 |
262 |
43 |
59.04 (54.13-63.94) |
70.64 (60.91-80.37) |
77.68 |
0.85 |
0.72 |
0.47 |
|
TSI |
24 |
298 |
58 |
67.15 (61.58-72.71) |
73.95 (63.78-84.13) |
72.54 |
0.89 |
0.37 |
0.71 |
|
CHB |
24 |
254 |
34 |
57.23 (52.47-61.99) |
76.49 (65.97-87.01) |
78.88 |
0.90 |
1.23 |
0.22 |
|
CHD |
24 |
212 |
24 |
47.77 (43.78-51.76) |
69.87 (60.24-79.49) |
72.34 |
0.81 |
1.68 |
0.09 |
|
JPT |
24 |
236 |
34 |
53.18 (48.75-57.61) |
73.66 (63.52-83.80) |
62.88 |
0.88 |
1.40 |
0.16 |
|
|
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|
nInd, number of individuals; S, number of segregating sites; Sp, number of private segregating sites; θ, estimated theta (4Neu) from S; π, nucleotide diversity; H, observed heterozygosity; Hap Het, averaged haplotype diversity over ten 10-kb windows; Tajima's D, Tajima's D; P, P-value for Tajima's D test. Confidence intervals of θ and π are shown in parentheses. |
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|
Xing et al. Genome Biology 2010 11:R113 doi:10.1186/gb-2010-11-11-r113 |
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