Table 1

Genetic diversity in continental groups and populations

nInd

S

Sp

θ

π (π10-5)

H (π10-5)

Hap Het

Tajima's D

P


Continent

India

152

533

237

84.70 (82.72-86.68)

83.68 (79.20-88.17)

77.53

0.89

-0.04

0.97

Africa

152

656

416

104.25 (101.82-106.68)

85.28 (80.71-89.86)

78.03

0.95

-0.57

0.57

Europe

152

535

205

85.02 (83.03-87.01)

74.64 (70.63-78.65)

67.95

0.88

-0.38

0.70

East Asia

152

436

186

69.29 (67.66-70.92)

73.61 (69.66-77.57)

73.10

0.90

0.19

0.85

Population

Brahmin

23

287

16

65.30 (59.72-70.88)

75.08 (64.51-85.64)

60.02

0.79

0.55

0.58

GIH

24

282

47

63.54 (58.27-68.81)

72.41 (62.45-82.38)

60.96

0.87

0.51

0.61

Irula

23

292

20

66.44 (60.76-72.12)

82.77 (71.13-94.40)

95.12

0.89

0.90

0.37

Mala/Madiga

24

342

46

77.06 (70.69-83.43)

84.46 (72.85-96.07)

89.33

0.87

0.35

0.73

Yadava

22

317

28

72.87 (66.45-79.29)

88.94 (76.15-101.73)

92.82

0.95

0.81

0.42

LWK

24

359

85

80.89 (74.21-87.57)

82.51 (71.17-93.86)

85.81

0.96

0.07

0.94

YRI

24

349

91

78.64 (72.14-85.14)

82.03 (70.75-93.31)

76.86

0.95

0.16

0.88

CEU

24

262

43

59.04 (54.13-63.94)

70.64 (60.91-80.37)

77.68

0.85

0.72

0.47

TSI

24

298

58

67.15 (61.58-72.71)

73.95 (63.78-84.13)

72.54

0.89

0.37

0.71

CHB

24

254

34

57.23 (52.47-61.99)

76.49 (65.97-87.01)

78.88

0.90

1.23

0.22

CHD

24

212

24

47.77 (43.78-51.76)

69.87 (60.24-79.49)

72.34

0.81

1.68

0.09

JPT

24

236

34

53.18 (48.75-57.61)

73.66 (63.52-83.80)

62.88

0.88

1.40

0.16


nInd, number of individuals; S, number of segregating sites; Sp, number of private segregating sites; θ, estimated theta (4Neu) from S; π, nucleotide diversity; H, observed heterozygosity; Hap Het, averaged haplotype diversity over ten 10-kb windows; Tajima's D, Tajima's D; P, P-value for Tajima's D test. Confidence intervals of θ and π are shown in parentheses.

Xing et al. Genome Biology 2010 11:R113   doi:10.1186/gb-2010-11-11-r113

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