Table 2

Simulated 124 bp E. coli

Corrections

Trim corrections

Mis-corrections

Error reads kept

Time (min)


Quake

283769.4

6581.2

243.0

393.6

11.8

SOAPdenovo

276770.4

2942.6

7019.4

5490.2

16.9

Shrec

165942.7

0.0

33140.3

96626.7

97.1

EULER

228316.4

16577.4

3763.0

414.8

6.9


Simulated E. coli 124 bp reads at 40× coverage averaged over five runs. Column descriptions are the same as Table 1. Quake corrects more reads while mis-correcting far fewer reads and keeping fewer reads with errors than all programs.

Kelley et al. Genome Biology 2010 11:R116   doi:10.1186/gb-2010-11-11-r116

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