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From RNA-seq reads to differential expression results

Alicia Oshlack*, Mark D Robinson and Matthew D Young

Genome Biology 2010, 11:220 doi:10.1186/gb-2010-11-12-220

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Analysis of high-depth sequence data for studying viral diversity: a comparison of next generation sequencing platforms using Segminator II

John Archer, Greg Baillie, Simon J Watson, Paul Kellam, Andrew Rambaut, David L Robertson BMC Bioinformatics 2012, 13:47 (23 March 2012)

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TopHat-Fusion: an algorithm for discovery of novel fusion transcripts

Daehwan Kim, Steven L Salzberg Genome Biology 2011, 12:R72 (11 August 2011)

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A tool for discovery of fusion transcripts in RNA-seq data, based on the efficient TopHat algorithm

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De novo sequence assembly and characterization of the floral transcriptome in cross- and self-fertilizing plants

Rob W Ness, Mathieu Siol, Spencer CH Barrett BMC Genomics 2011, 12:298 (7 June 2011)

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