Table 1 |
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|
The coverage of gene groups by different sources of functional information |
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|
Origin |
Age |
Number of genes |
Pfam coveragea |
Fraction essentialb |
GO MF coveragec |
Fraction with interactionsd |
|
|
||||||
|
Novel |
Old |
2696 |
0.36 |
0.30 |
0.67 |
0.77 |
|
Young |
239 |
0.12 |
0.00 |
0.22 |
0.25 |
|
|
Duplicate |
Old |
1434 |
0.57 |
0.30 |
0.88 |
0.81 |
|
WGD |
1087 |
0.45 |
0.08 |
0.76 |
0.72 |
|
|
Young |
314 |
0.53 |
0.02 |
0.60 |
0.55 |
|
|
|
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|
aPfam coverage: average fraction of protein length covered by Pfam domains; bfraction essential: fraction of genes in each group that are essential; cGO MF coverage: fraction of genes with Gene Ontology (GO) Molecular Function (MF) annotations; dfraction with interactions: fraction of genes with interactions in the protein physical interaction network. Each statistic is calculated over those genes whose proteins have known physical interactions. |
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|
Capra et al. Genome Biology 2010 11:R127 doi:10.1186/gb-2010-11-12-r127 |
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