Table 4

Top ten Gene Ontology categories using GOseq adjusted for total read count bias

GOID

Term

Ontology

Rank standard

Rank GOseq

Median read count of genes in category


GO:0016020

Membrane

CC

16

1

91

GO:0005886

Plasma membrane

CC

96

2

50

GO:0005887

Integral to plasma membrane

CC

313

3

36

GO:0005576

Extracellular region

CC

4,310

4

18

GO:0015020

Glucuronosyl transferase activity

MF

388

5

10

GO:0005783

Endoplasmic reticulum

CC

6

6

197

GO:0016021

Integral to membrane

CC

179

7

68

GO:0006470

Protein amino acid dephosphorylation

BP

31

8

224

GO:0045944

Positive regulation of transcription from RNA polymerase II promoter

BP

39

9

133

GO:0007049

Cell cycle

BP

14

10

202


BP, biological process; CC, cellular component; MF, molecular function.

Young et al. Genome Biology 2010 11:R14   doi:10.1186/gb-2010-11-2-r14

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