Table 1 |
|||||
|
Number of dubious duplications at the eutherian node involving various species as 'orphans' |
|||||
|
Species |
Isolated sp(i) |
sp(i) versus >5 |
sp(i) versus >5 - no sp(i) |
sp(i) versus >10 |
sp(i) versus >10 - no sp(i) |
|
|
|||||
|
2× coverage genomes |
|||||
|
Sorex araneus |
621 |
591 |
581 |
563 |
557 |
|
Erinaceus europaeus |
565 |
531 |
523 |
498 |
493 |
|
Ochotona princeps |
376 |
343 |
337 |
308 |
302 |
|
Cavia porcellus |
344 |
308 |
302 |
280 |
274 |
|
Echinops telfairi |
272 |
246 |
235 |
237 |
227 |
|
Myotis lucifugus |
192 |
168 |
156 |
146 |
137 |
|
Tupaia belangeri |
192 |
159 |
150 |
132 |
126 |
|
Spermophilus tridecemlineatus |
182 |
142 |
140 |
110 |
108 |
|
Oryctolagus cuniculus |
149 |
114 |
108 |
93 |
88 |
|
Otolemur garnettii |
125 |
100 |
97 |
79 |
76 |
|
Loxodonta africana |
109 |
77 |
64 |
70 |
59 |
|
Microcebus murinus |
112 |
90 |
86 |
62 |
59 |
|
Felis catus |
98 |
73 |
70 |
57 |
54 |
|
Dasypus novemcinctus |
15 |
6 |
0 |
4 |
0 |
|
High-coverage genomes |
|||||
|
Bos taurus |
200 |
168 |
131 |
148 |
112 |
|
Canis familiaris |
156 |
120 |
94 |
93 |
71 |
|
Mus musculus |
129 |
100 |
94 |
75 |
70 |
|
Equus caballus |
134 |
110 |
78 |
86 |
58 |
|
Rattus norvegicus |
73 |
52 |
37 |
37 |
28 |
|
Pongo pygmaeus |
34 |
25 |
21 |
17 |
14 |
|
Macaca mulatta |
62 |
44 |
24 |
28 |
14 |
|
Pan troglodytes |
24 |
13 |
7 |
10 |
5 |
|
Homo sapiens |
14 |
7 |
5 |
4 |
3 |
|
One-tail Mann-Whitney test |
|||||
|
P-value |
0.016 |
0.016 |
0.005 |
0.014 |
0.005 |
|
|
|||||
|
See Figure 7 and text for details. Different columns correspond to cases where one side of a duplication at the eutherian node involved: an orphan species (isolated sp(i)), or one orphan species versus more than five (sp(i) versus >5) or more than ten (sp(i) versus >10) species on the other side of the duplication. The column labeled with 'no sp(i)' indicates the cases where the orphan species is absent from the other side of the duplication node (this requires perfect reciprocal complementary gene losses and, hence, corresponds to a species-overlap score of zero). Values are sorted according to the last column. |
|||||
|
Milinkovitch et al. Genome Biology 2010 11:R16 doi:10.1186/gb-2010-11-2-r16 |
|||||
