Table 1

Number of genes called differentially expressed between liver and kidney at a false discovery rate <0.001 using different normalization methods

Library size normalization

TMM normalization

Overlap


Higher in liver

2,355

4,293

2,355

Higher in kidney

8,332

4,935

4,935

Total

10,867

9,228

7,290

House keeping genes (545)

Higher in liver

45

137

45

Higher in kidney

376

220

220

Total

421

357

265


TMM, trimmed mean of M values.

Robinson and Oshlack Genome Biology 2010 11:R25   doi:10.1186/gb-2010-11-3-r25

Open Data