Method

Detection and correction of false segmental duplications caused by genome mis-assembly

David R Kelley^* and Steven L Salzberg

Center for Bioinformatics and Computational Biology, Institute for Advanced Computer Studies, University of Maryland, College Park, MD 20742, USA

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Genome Biology 2010, 11:R28 doi:10.1186/gb-2010-11-3-r28

Published: 10 March 2010

Additional file 1:

Descriptions of contigs involved in mis-assembled DCCs and DOCs, annotations on false duplications, and polymorphisms discovered.

Format: GZ Size: 503KB Download file

Additional file 2:

Description of our method for identifying SNPs and indels in recomputed read multiple alignments [54-56].

Format: DOC Size: 47KB Download file

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