Genome Biology

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Comparative genomics reveals 104 candidate structured RNAs from bacteria, archaea, and their metagenomes

Zasha Weinberg*, Joy X Wang, Jarrod Bogue, Jingying Yang, Keith Corbino, Ryan H Moy and Ronald R Breaker*

Genome Biology 2010, 11:R31 doi:10.1186/gb-2010-11-3-r31

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Identification of CRISPR and riboswitch related RNAs among novel noncoding RNAs of the euryarchaeon Pyrococcus abyssi

Kounthéa Phok, Annick Moisan, Dana Rinaldi, Nicolas Brucato, Agamemnon J Carpousis, Christine Gaspin, Béatrice Clouet-d'Orval BMC Genomics 2011, 12:312 (13 June 2011)

Research   Open Access

Fast and accurate clustering of noncoding RNAs using ensembles of sequence alignments and secondary structures

Yutaka Saito, Kengo Sato, Yasubumi Sakakibara BMC Bioinformatics 2011, 12(Suppl 1):S48 (15 February 2011)