Additional file 1.

Supplemental Tables S1 to S7. Table S1: a summary of representative species included in this study. Table S2: a summary of MCL gene clustering results. Table S3: a summary of gene families known to have experienced early eukaryotic gene duplication. Table S4: test of the impact of long-branch attraction on orthogroups with vulnerable topologies. Table S5: distribution of orthogroups with phyletic patterns supporting early eukaryotic duplication - analysis I. Table S6: distribution of orthogroups with phyletic patterns supporting early eukaryotic duplication - analysis III. Table S7: results of MCL clustering analyses with genes from additional animal species.

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Zhou et al. Genome Biology 2010 11:R38   doi:10.1186/gb-2010-11-4-r38