Table 1 |
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|
Number of orthogroups and early eukaryotic duplications identified in analysis I |
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|
NJ-BSa |
ML-BS |
ML-aLRTb |
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|
|
|
|
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|
≥ 50% |
≥ 70% |
≥ 50% |
≥ 70% |
≥ 50% |
≥ 70% |
|
|
|
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|
Type I orthogroup with duplication |
205 (136) |
119 (88) |
199 (135) |
104 (82) |
282 (188) |
234 (166) |
|
Type I orthogroup total |
522 |
435 |
511 |
445 |
599 |
560 |
|
Type II orthogroup with duplication |
100 (63) |
61 (43) |
72 (46) |
37 (29) |
81 (60) |
85 (66) |
|
Type II orthogroup total |
235c |
260 |
229c |
234 |
176c |
196 |
|
Total orthogroup with duplication |
305 (199) |
180 (131) |
271 (181) |
141 (111) |
363 (248) |
319 (232) |
|
Orthogroup total |
757 |
695 |
740 |
679 |
775 |
756 |
|
Percentage |
40.3% (26.3%) |
25.9% (18.8%) |
36.6% (24.5%) |
20.8% (16.3%) |
46.8% (32.0%) |
42.2% (30.7%) |
|
|
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|
Type I orthogroup refers to orthogroups with a prokaryotic outgroup; type II orthogroup refers to orthogroups without a prokaryotic outgroup. Entries in bold and in parentheses indicate that the duplications were inferred based on stringent criteria that required that at least one species was present in both paralogous clades. aBS, bootstrap test. baLRT, approximate likelihood-ratio test. cThese numbers of type II orthogroups at a support level of ≥ 70% are greater than that at a support level of ≥ 50% since some type II orthogroups with ≥ 70% support were from type I orthogroups with ≥ 50% support whose prokaryotic outgroup had support less than 70%. |
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|
Zhou et al. Genome Biology 2010 11:R38 doi:10.1186/gb-2010-11-4-r38 |
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