Table 4

Number of orthogroups and early eukaryotic duplications identified in analysis III

NJ-BSa

ML-BS

ML-aLRTb




≥ 50%

≥ 70%

≥ 50%

≥ 70%

≥ 50%

≥ 70%


Type I orthogroup with duplication

172

93

169

80

334

276

Type I orthogroup total

508

389

526

380

774

680

Type II orthogroup with duplication

119

59

102

49

285

301

Type II orthogroup total

724

597

605

504

581

659

Total orthogroup with duplication

291

152

271

129

619

577

Orthogroup total

1,232

986

1,131

884

1,355

1,339

Percentage

23.6%

15.4%

24.0%

14.6%

45.7%

43.1%


Type I orthogroup refers to orthogroups with a prokaryotic outgroup; type II orthogroup refers to orthogroups without a prokaryotic outgroup. aBS, bootstrap test. baLRT, approximate likelihood-ratio test.

Zhou et al. Genome Biology 2010 11:R38   doi:10.1186/gb-2010-11-4-r38

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