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miRTRAP, a computational method for the systematic identification of miRNAs from high throughput sequencing data

David Hendrix*, Michael Levine and Weiyang Shi*

Department of Molecular and Cell Biology, Division of Genetics, Genomics and Development, Center for Integrative Genomics, University of California, Berkeley, 142 LSA#3200, Berkeley, CA 94720-3200, USA

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Genome Biology 2010, 11:R39 doi:10.1186/gb-2010-11-4-r39

Published: 6 April 2010

Additional files

Additional file 1:

Supplemental methods, Supplemental Figures 1 to 3 and Supplemental Tables 1 to 3.

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Additional file 2:

Supplemental Table 4. List of all predicted Ciona miRs with genomic location, mature sequences (5p-, 3p-) and folds.

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Additional file 3:

Supplemental Table 5. Details of Ciona miR products.

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Additional file 4:

Supplemental Table 6. Details of conserved Ciona miR family members.

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Additional file 5:

Supplemental Table 7. Details of Ciona specific family members.

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Additional file 6:

Supplemental Table 8. List of conservation between C. intestinalis and C. savignyi miRs.

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