Table 3 |
||||||||
|
Number of loci in E. coli alignments corresponding to known elements |
||||||||
|
E. coli |
E. coli B2 |
|||||||
|
|
|
|||||||
|
All loci |
Microdiversity loci |
All loci |
Microdiversity loci |
|||||
|
|
|
|
|
|||||
|
n |
Percent |
n |
Percent |
n |
Percent |
n |
Percent |
|
|
|
||||||||
|
Total |
1,037 |
100 |
640 |
100 |
539 |
100 |
370 |
100 |
|
Bacteriophages |
27 |
3 |
0 |
0 |
35 |
6 |
12 |
3 |
|
CRISPR |
3 |
0.3 |
1 |
0.1 |
3 |
2 |
1 |
0.2 |
|
Genomic islands |
127 |
12 |
61 |
10 |
103 |
19 |
64 |
17 |
|
Insertion sequences |
55 |
5 |
2 |
0.3 |
48 |
9 |
8 |
2 |
|
Palindromic units |
129 |
12 |
105 |
16 |
44 |
8 |
37 |
10 |
|
Minisatellites |
18 |
2 |
12 |
2 |
17 |
3 |
15 |
4 |
|
Other |
678 |
65 |
459 |
72 |
289 |
53 |
233 |
63 |
|
|
||||||||
|
CRISPR, clustered, regularly interspaced short palindromic repeat. |
||||||||
|
Touzain et al. Genome Biology 2010 11:R45 doi:10.1186/gb-2010-11-4-r45 |
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