Table 4 |
||||
|
Characteristics of microdiversity loci flanked by repeats |
||||
|
E. coli |
E. coli B2 |
S. aureus |
S. pyogenes |
|
|
|
||||
|
VS analysis |
||||
|
VS flanked by repeats/all VS |
10% |
14% |
18% |
12% |
|
Repeats less than 30 bp/all VS with repeats |
74% |
66% |
82% |
94% |
|
Loci analysis |
||||
|
Total number of loci |
640 |
370 |
556 |
250 |
|
% of loci with VSs flanked by repeats (r-loci)/all loci |
21% |
22% |
32% |
23% |
|
% loci with possible deletion/r-loci |
51% |
66% |
16% |
42% |
|
% loci with possible deletion/all loci |
21% |
25% |
22% |
20% |
|
|
||||
|
Touzain et al. Genome Biology 2010 11:R45 doi:10.1186/gb-2010-11-4-r45 |
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