Table 3

Average fold changes of genes, exons, and junctions of chromosome 1

Average fold changes of mean sequencing preferences

Dataset used to train the model

Genes

Exons

Junctions (read length = 35)

Junctions (read length = 100)

Wold

1.02

1.12

1.13

1.07

Burge

1.18

1.32

1.37

1.28

Grimmond

1.25

2.17

2.34

1.73

Li et al. Genome Biology 2010 11:R50   doi:10.1186/gb-2010-11-5-r50