Table 1 |
||||||
|
Comparison of decay rates and half-lives of 17 selected genes determined from microarray data and qRT-PCR |
||||||
|
Microarray |
qRT-PCR |
|||||
|
|
|
|||||
|
Gene |
Cluster |
Expression at time 0 [log2] |
Half-life [min] |
Decay rate [min] |
Half-life [min] |
Decay rate [min] |
|
|
||||||
|
PMM1077 |
7 |
5.6 |
1.7 |
2.4 |
1.6 |
1.6 |
|
dnaN |
3 |
6.4 |
1.5 |
1.7 |
3.0 |
2.1 |
|
psaK |
9 |
12.3 |
4.9 |
5.0 |
5.3 |
4.8 |
|
atpA |
11 |
10.9 |
12.2 |
4.9 |
6.2 |
3.3 |
|
psbA |
11 |
14.3 |
40.1 |
71.0 |
18.5 |
16.2 |
|
recN |
ND |
4.0 |
3.9 |
5.3 |
2.2 |
6.4 |
|
recA |
5 |
8.5 |
2.3 |
2.7 |
2.6 |
7.5 |
|
ftsZ |
5 |
9.4 |
1.8 |
2.1 |
3.4 |
2.1 |
|
amt1 |
11 |
13.7 |
52.1 |
77.2 |
17.3 |
11.3 |
|
psbD |
9 |
13.2 |
9.0 |
8.8 |
7.0 |
5.6 |
|
PMM1121 (som) |
11 |
13.9 |
28.6 |
39.1 |
13.0 |
10.4 |
|
pcb |
11 |
13.9 |
15.6 |
25.8 |
6.6 |
6.3 |
|
PMM1447 |
ND |
3.7 |
59.5 |
18.0 |
40.6 |
4.1 |
|
atpE |
11 |
13.0 |
13.5 |
24.8 |
15.6 |
4.7 |
|
atpB |
9 |
10.5 |
4.6 |
3.4 |
8.0 |
4.7 |
|
atp1 |
10 |
10.7 |
5.0 |
2.3 |
2.4 |
2.6 |
|
16S rRNA |
2 |
14.9 |
370.1 |
20.7 |
-261.3 |
54.4 |
|
|
||||||
|
ND, not determined. |
||||||
|
Steglich et al. Genome Biology 2010 11:R54 doi:10.1186/gb-2010-11-5-r54 |
||||||
