Table 1

Comparison of decay rates and half-lives of 17 selected genes determined from microarray data and qRT-PCR

Microarray

qRT-PCR



Gene

Cluster

Expression at time 0 [log2]

Half-life [min]

Decay rate [min]

Half-life [min]

Decay rate [min]


PMM1077

7

5.6

1.7

2.4

1.6

1.6

dnaN

3

6.4

1.5

1.7

3.0

2.1

psaK

9

12.3

4.9

5.0

5.3

4.8

atpA

11

10.9

12.2

4.9

6.2

3.3

psbA

11

14.3

40.1

71.0

18.5

16.2

recN

ND

4.0

3.9

5.3

2.2

6.4

recA

5

8.5

2.3

2.7

2.6

7.5

ftsZ

5

9.4

1.8

2.1

3.4

2.1

amt1

11

13.7

52.1

77.2

17.3

11.3

psbD

9

13.2

9.0

8.8

7.0

5.6

PMM1121 (som)

11

13.9

28.6

39.1

13.0

10.4

pcb

11

13.9

15.6

25.8

6.6

6.3

PMM1447

ND

3.7

59.5

18.0

40.6

4.1

atpE

11

13.0

13.5

24.8

15.6

4.7

atpB

9

10.5

4.6

3.4

8.0

4.7

atp1

10

10.7

5.0

2.3

2.4

2.6

16S rRNA

2

14.9

370.1

20.7

-261.3

54.4


ND, not determined.

Steglich et al. Genome Biology 2010 11:R54   doi:10.1186/gb-2010-11-5-r54

Open Data