Additional file 3.
NEXT-RNAi summary HTML page for the design of a genome-wide RNAi library for the Drosophila genome. This page provides information about the number of successful designs (here, about 94% of the 74,907 query-sequences could be covered with long dsRNA designs). The 'Links to HTML results' link to detailed reports (Additional file 4) for each design (the full list of links was cut for this figure). 'Links to result files' directly link to NEXT-RNAi output files, such as the tab-delimited result file (the main output file) summarizing all calculations done in one line per design, a FASTA file only containing the final reagent sequences as well as GFF (generic feature file) and AFF (annotation file format) output files for visualization and direct upload of reagents to a genome browser, respectively. Further, links to the user-input text files and to report files (for example, reports about failed designs) are provided.
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Horn et al. Genome Biology 2010 11:R61 doi:10.1186/gb-2010-11-6-r61