Table 1

AK043754, AK082072, and AK082467 orthologs among vertebrates

lncRNA

Species (common name)

GenBank accession

Tissue type

Dev. stage


AK043754

M. musculus (mouse)

[Genbank:AK043754]*

Cortex

Neonate

R. norvegicus (rat)

[Genbank:BF565173]

Brain

Adult

C. jacchus (marmoset)

[Genbank:EH380404]

Hippocampus

Adult

H. sapiens (human)

[Genbank:DB326634]

Brain

Fetal

B. taurus (cow)

[Genbank:CO886535]

Brain

Adult

S. scrofa (pig)

[Genbank:EW186118]

Cerebellum

Fetal

T. guttata (zebra finch)

[Genbank:DV959637]

Brain

Pooled

AK082072

M. musculus (mouse)

[Genbank:AK082072]*

Cerebellum

Neonate

R. norvegicus (rat)

[Genbank:CB798977]

Hypothalamus

Unknown

M. fascicularis (macaque)

[Genbank:CJ466564]

Parietal lobe

Adult

H. sapiens (human)

[Genbank:DA317999]

Hippocampus

Unknown

C. lupus familiaris (dog)

[Genbank:CO685831]

Kidney

Adult

B. taurus (cattle)

[Genbank:DV836210]

Hypothalamus

Adult

S. scrofa (pig)

[Genbank:EV900652]

Cerebellum

Unknown

G. gallus (chicken)

[Genbank:BU232759]

Head

Embryo

AK082467/Rmst

M. musculus (mouse)

[Genbank:AK082467]*

Cerebellum

Neonate

M. musculus (mouse)

[Genbank:AK086758]*

Head

Embryo

R. norvegicus (rat)

[Genbank:BF397583]

Whole embryo

Embryo

H. sapiens (human)

[Genbank:DA347802]

Substantia nigra

Unknown

C. lupus familiaris (dog)

[Genbank:CO586030]

Brain

Adult

B. taurus (cow)

[Genbank:CB447323]

Pooled

Unknown

S. scrofa (pig)

[Genbank:BI405055]

Anterior pituitary

Adult


*Sequences used as queries in BLASTN searches against the NCBI nr database to identify orthologous ESTs. The cut-off for significance was set at E-value < 1 ×10-10.

Chodroff et al. Genome Biology 2010 11:R72   doi:10.1186/gb-2010-11-7-r72

Open Data