Research
Genome sequence of the necrotrophic plant pathogen Pythium ultimum reveals original pathogenicity mechanisms and effector repertoire
- † Equal contributors
1 Agriculture and Agri-Food Canada, 960 Carling Ave, Ottawa, ON, K1A 0C6, Canada
2 Department of Biology, Carleton University, Ottawa, ON, K1S 5B6, Canada
3 CBS-KNAW, Fungal Biodiversity Centre, Uppsalalaan 8, Utrecht, 3584 CT, The Netherlands
4 The Sainsbury Laboratory, Norwich, NR4 7UH, UK
5 Department of Plant Biology, Michigan State University, East Lansing, MI 48824, USA
6 Eccles Institute of Human Genetics, University of Utah, 15 North 2030 East, Room 2100, Salt Lake City, UT 84112-5330, USA
7 Biodiversity and Climate Research Centre, Georg-Voigt-Str 14-16, D-60325, Frankfurt, Germany
8 Department of Biological Sciences, Insitute of Ecology, Evolution and Diversity, Johann Wolfgang Goethe University, Siesmayerstr. 70, D-60323 Frankfurt, Germany
9 Department of Bioagricultural Sciences and Pest Management, Colorado State University, Fort Collins, CO 80523-1177, USA
10 School of Biology, Newcastle University, Newcastle upon Tyne, NE1 7RU, UK
11 Genome Project Solutions, 1024 Promenade Street, Hercules, CA 94547, USA
12 J Craig Venter Institute, 9704 Medical Center Dr., Rockville, MD 20850, USA
13 Surfaces Cellulaires et Signalisation chez les Végétaux, UMR5546 CNRS-Université de Toulouse, 24 chemin de Borde Rouge, BP42617, Auzeville, Castanet-Tolosan, F-31326, France
14 Scottish Association for Marine Science, Oban, PA37 1QA, UK
15 Laboratory of Phytopathology, Wageningen University, NL-1-6708 PB, Wageningen, The Netherlands
16 Centre for BioSystems Genomics (CBSG), PO Box 98, 6700 AB Wageningen, The Netherlands
17 Institute of Medical Sciences, University of Aberdeen, Foresterhill, Aberdeen, AB25 2ZD, UK
18 The Broad Institute of MIT and Harvard, Cambridge, MA 02141, USA
19 Department of Pathology, Faculty of Medicine-Ramathibodi Hospital, Mahidol University, Rama 6 Road, Bangkok, 10400, Thailand
20 Department of Biological Sciences, Bowling Green State University, Bowling Green, OH 43403, USA
21 Department of Plant Pathology and Microbiology, University of California, Riverside, CA 92521, USA
22 Virginia Bioinformatics Institute, Virginia Polytechnic Institute and State University, Washington Street, Blacksburg, VA 24061-0477, USA
23 Architecture et Fonction des Macromolecules Biologiques, UMR6098, CNRS, Univ. Aix-Marseille I & II, 163 Avenue de Luminy, 13288 Marseille, France
24 USDA-ARS, 1636 East Alisal St, Salinias, CA, 93905, USA
25 Evolutionary Systems Biology, SRI International, Room AE207, 333 Ravenswood Ave, Menlo Park, CA 94025, USA
Genome Biology 2010, 11:R73 doi:10.1186/gb-2010-11-7-r73
Published: 13 July 2010Additional files
Additional file 1:
Supplemental methods and results. Additional details on sequencing methods and analysis results citing methods or data from [147-166].
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Additional file 2:
Supplemental Tables S1 to S11 providing detailed lists and analyses.
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Additional file 3:
Supplemental Figures S1 to S16, supporting data analyses.
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Additional file 4:
Multiple sequence alignment of oomycete proteins with similarity to P. ultimum Family 3 proteins. Predicted secreted proteins (91) with similarity to Family 3 proteins from various oomycete species were aligned demonstrating the YxSL[KR] motif.
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