Table 2

Protein families implicated in plant pathogenesis: P. ultimum versus Phytophthora spp. or diatoms

P. ultimum

Ph. infestans

Ph. sojae

Ph. ramorum

Thalassiosira pseudonana (diatom)

Phaeodactylum tricornutum (diatom)


ABC transportersa

140

137

141

135

57

65

Aspartyl protease families A1, A8b

29

16

16

18

ND

8

Crinklers (CRN-family)a

26

196

100

19

0

0

Cutinasec

0

4

13

4

0

ND

Cysteine protease families C1, C2, C56a

42

38

33

42

ND

11

Cytochrome P450sb

41

28

31

31

ND

10

Elicitin-like proteinsd

24

40

57

50

0

0

Glycoside hydrolasesc

180

277

301

258

59

ND

Lipasesd

31

19

27

17

22

17

NPP1-like proteins (necrosis-inducing proteins)d

7

27

39

59

0

0

PcF/SCR-liked

3

16

8

1

0

0

Pectin esterasesc

0

13

19

11

0

ND

Polysaccharide lyasesc

29

67

54

49

0

ND

Phospholipasesd

20

36

31

28

18

11

Protease inhibitors, alld

43

38

26

18

11

5

RXLR effectorsa

0

563

350

350

0

0

Serine protease families S1A, S8, S10b

85

60

63

57

ND

31


aData from manual curation/analyses. bData from PANTHER family analyses (MEROPS classification). cData from CAZy. dData from analysis of TRIBEMCL families. ND, not determined.

Lévesque et al. Genome Biology 2010 11:R73   doi:10.1186/gb-2010-11-7-r73

Open Data