Table 3 |
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|
Regions of high positive selection, in close proximity to genes, identified in the analysis of Williamson et al. [41] |
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|
Williamson et al. [41]regions of high positive selection |
Corresponding regions of low Tajima's D in this analysis |
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|
|
|
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|
Chr |
Position (hg18) |
Nearest gene |
Position (hg18) |
Nearest gene |
Tajima's D |
|
|
|||||
|
1 |
113519196 |
LRIG2 (50 kb) |
113505001-113515000 |
- |
-1.72 |
|
1 |
155990832 |
FCRL2 (0) |
155990001-156000000 |
FCRL2 (0 kb) |
-2.08 |
|
1 |
212654925 |
PTPN14 (0) |
212595001-212605000 |
- |
-1.09 |
|
2 |
140931201 |
LRP1B (0) |
140930001-140940000 |
LRP1B (0 kb) |
-2.06 |
|
2 |
201548002 |
MGC39518 (3 kb) |
201455001-201465000 |
- |
-1.73 |
|
3 |
29922879 |
RBMS3 (0) |
29915001-29925000 |
RBMS3 (0 kb) |
-2.17 |
|
3 |
43338322 |
SNRK (0) |
43385001-43395000 |
- |
-1.30 |
|
3 |
145075381 |
SLC9A9 (26 kb) |
145090001-145100000 |
- |
-1.71 |
|
4 |
71744283 |
IGJ (0) |
71740001-71750000 |
IGJ (0 kb) |
-2.55 |
|
4 |
169386385 |
FLJ20035 (0) |
169395001-169405000 |
FLJ20035/DDX60 (0 kb) |
-2.10 |
|
5 |
15527762 |
FBXL7 (26 kb) |
15535001-15545000 |
FBXL7 (8.3 kb) |
-2.23 |
|
6 |
128662923 |
PTPRK (0) |
128655001-128665000 |
PTPRK (0 kb) |
-2.37 |
|
8 |
57165523 |
RPS20 (16 kb) |
57200001-57210000 |
PLAG1 (26 kb) |
-2.06 |
|
10 |
45498260 |
ANUBL1 (10 kb) |
45495001-45505000 |
FAM21C (0 kb) |
-2.27 |
|
12 |
81525433 |
DKFZp762A217 (79 kb) |
81520001-81530000 |
DKFZp762A217 (75 kb) |
-2.21 |
|
13 |
37806830 |
UFM1 (15 kb) |
37805001-37815000 |
- |
-1.38 |
|
15 |
37639096 |
THBS1 (21 kb) |
37640001-37650000 |
- |
-1.95 |
|
15 |
89644996 |
SV2B (5 kb) |
89640001-89650000 |
SV2B (0 kb) |
-2.08 |
|
16 |
80605406 |
HSPC105 (3 kb) |
80595001-80605000 |
- |
-1.87 |
|
18 |
30388871 |
DTNA (0) |
30380001-30390000 |
DTNA (0 kb) |
-2.21 |
|
18 |
44274281 |
KIAA0427 (45 kb) |
44365001-44375000 |
KIAA0427 (0 kb) |
-2.28 |
|
|
|||||
|
Regions in this analysis with a Tajima's D value of less than -2 within 100 kb of the corresponding region from Williamson et al. [41] are highlighted in bold. (Selection of 21 random positions in the genome 1,000 times never produced as many within close proximity to a window whose Tajima's D was less than -2.) |
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|
Tong et al. Genome Biology 2010 11:R91 doi:10.1186/gb-2010-11-9-r91 |
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