Additional file 3.

Domain gains and loss counts during eukaryote evolution. Inferred domainome sizes are shown in blue, domain gain counts in green, and domain loss counts in red. Numbers in brackets are average domainome sizes of all extant descendents of each node. Summary of conditions used: protein predictions as listed in Additional file 1, domain models from Pfam 24.0, analyzed with HMMER 3.0b2, Pfam 'gathering' cutoffs.

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Zmasek and Godzik Genome Biology 2011 12:R4   doi:10.1186/gb-2011-12-1-r4