Identification of fusion genes in breast cancer by paired-end RNA-sequencing
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* Corresponding author: Olli Kallioniemi olli.kallioniemi@fimm.fi
- † Equal contributors
Genome Biology 2011, 12:R6 doi:10.1186/gb-2011-12-1-r6
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BioMed Central: 2 citations
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Research article
Mapsembler, targeted and micro assembly of large NGS datasets on a desktop computer Pierre Peterlongo, Rayan Chikhi BMC Bioinformatics 2012, 13:48 (23 March 2012) Mapsembler, a sequence assembly tool for desktop computers, uses NGS reads from newly sequenced, non-assembled genomes or transcriptomes to provide targeted assemblies and has retrieved known gene fusions in human cancer and discovered new ones
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Method
TopHat-Fusion: an algorithm for discovery of novel fusion transcripts Daehwan Kim, Steven L Salzberg Genome Biology 2011, 12:R72 (11 August 2011) A tool for discovery of fusion transcripts in RNA-seq data, based on the efficient TopHat algorithm
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