Table 3 |
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|
Major kinase groups of Ich compared with other species |
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|
Kinase group |
Ich |
T. the |
P. tet |
P. fal* |
T. gon* |
S. cer |
C. ele |
D. rer |
H. sap |
|
|
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|
AGC |
78 (8) |
51 (8) |
219 (8) |
6 (4) |
11 (4) |
17 (6) |
29 (16) |
75 (13) |
63 (15) |
|
Atypical |
37 (5) |
103 (6) |
270 (6) |
5 (3) |
5 (2) |
14 (6) |
18 (7) |
47 (12) |
38 (12) |
|
CAMK |
68 (5) |
62 (6) |
442 (6) |
13 (4) |
23 (3) |
22 (4) |
40 (14) |
95 (17) |
74 (18) |
|
CK1 |
24 (1) |
19 (1) |
125 (1) |
3 (1) |
3 (1) |
4 (1) |
83 (12) |
14 (3) |
12 (3) |
|
CMGC |
68 (9) |
61 (10) |
199 (9) |
16 (8) |
21 (6) |
23 (8) |
48 (10) |
65 (9) |
63 (9) |
|
Other |
330 (24) |
747 (45) |
1,449 (40) |
28 (6) |
71 (11) |
37 (20) |
67 (27) |
80 (30) |
81 (34) |
|
RSK |
2 (1) |
1 (1) |
5 (1) |
0 (0) |
0 (0) |
0 (0) |
0 (0) |
0 (0) |
0 (0) |
|
RGC |
0 (0) |
0 (0) |
0 (0) |
0 (0) |
0 (0) |
0 (0) |
27 (1) |
8 (1) |
5 (1) |
|
STE |
13 (4) |
19 (4) |
39 (4) |
1 (1) |
1 (1) |
14 (3) |
24 (3) |
51 (4) |
47 (4) |
|
TK |
0 (0) |
0 (0) |
0 (0) |
0 (0) |
0 (0) |
0 (0) |
84 (18) |
107 (28) |
90 (29) |
|
TKL |
13 (3) |
5 (3) |
15 (3) |
4 (1) |
7 (1) |
0 (0) |
15 (5) |
15 (7) |
45 (8) |
|
Unclassified (PF00069) |
38 (1) |
0 (0) |
0 (0) |
36 (1) |
23 (1) |
0 (0) |
0 (0) |
0 (0) |
0 (0) |
|
Total |
671 (61) |
1,068 (84) |
2,763 (78) |
112 (29) |
165 (30) |
131 (48) |
435 (113) |
557 (124) |
518 (133) |
|
Percentage of proteome |
8.29 |
3.89 |
8.47 |
2.04 |
1.83 |
1.96 |
2.15 |
2.31 |
2.19 |
|
|
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|
Total number of genes mapped to each kinase group; in parentheses, number of different families. An expanded list of all families under each kinase group is shown in Additional file 7. T. the, T. thermophila; P. tet, P. tetraurelia; P. fal, Plasmodium falciparum; T. gon, Toxoplasma gondii; S. cer, Saccharomyces cerevisiae; C. ele, Caenorhabditis elegans; D. rer, Danio rerio; H. sap, Homo sapiens. *Data for these two species was obtained from published reports [117,118] rather than from kinbase [116] or by orthology to the kinbase data, as for the other species. |
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|
Coyne et al. Genome Biology 2011 12:R100 doi:10.1186/gb-2011-12-10-r100 |
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