Table 3

Major kinase groups of Ich compared with other species

Kinase group

Ich

T. the

P. tet

P. fal*

T. gon*

S. cer

C. ele

D. rer

H. sap


AGC

78 (8)

51 (8)

219 (8)

6 (4)

11 (4)

17 (6)

29 (16)

75 (13)

63 (15)

Atypical

37 (5)

103 (6)

270 (6)

5 (3)

5 (2)

14 (6)

18 (7)

47 (12)

38 (12)

CAMK

68 (5)

62 (6)

442 (6)

13 (4)

23 (3)

22 (4)

40 (14)

95 (17)

74 (18)

CK1

24 (1)

19 (1)

125 (1)

3 (1)

3 (1)

4 (1)

83 (12)

14 (3)

12 (3)

CMGC

68 (9)

61 (10)

199 (9)

16 (8)

21 (6)

23 (8)

48 (10)

65 (9)

63 (9)

Other

330 (24)

747 (45)

1,449 (40)

28 (6)

71 (11)

37 (20)

67 (27)

80 (30)

81 (34)

RSK

2 (1)

1 (1)

5 (1)

0 (0)

0 (0)

0 (0)

0 (0)

0 (0)

0 (0)

RGC

0 (0)

0 (0)

0 (0)

0 (0)

0 (0)

0 (0)

27 (1)

8 (1)

5 (1)

STE

13 (4)

19 (4)

39 (4)

1 (1)

1 (1)

14 (3)

24 (3)

51 (4)

47 (4)

TK

0 (0)

0 (0)

0 (0)

0 (0)

0 (0)

0 (0)

84 (18)

107 (28)

90 (29)

TKL

13 (3)

5 (3)

15 (3)

4 (1)

7 (1)

0 (0)

15 (5)

15 (7)

45 (8)

Unclassified (PF00069)

38 (1)

0 (0)

0 (0)

36 (1)

23 (1)

0 (0)

0 (0)

0 (0)

0 (0)

Total

671 (61)

1,068 (84)

2,763 (78)

112 (29)

165 (30)

131 (48)

435 (113)

557 (124)

518 (133)

Percentage of proteome

8.29

3.89

8.47

2.04

1.83

1.96

2.15

2.31

2.19


Total number of genes mapped to each kinase group; in parentheses, number of different families. An expanded list of all families under each kinase group is shown in Additional file 7. T. the, T. thermophila; P. tet, P. tetraurelia; P. fal, Plasmodium falciparum; T. gon, Toxoplasma gondii; S. cer, Saccharomyces cerevisiae; C. ele, Caenorhabditis elegans; D. rer, Danio rerio; H. sap, Homo sapiens. *Data for these two species was obtained from published reports [117,118] rather than from kinbase [116] or by orthology to the kinbase data, as for the other species.

Coyne et al. Genome Biology 2011 12:R100   doi:10.1186/gb-2011-12-10-r100

Open Data