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Resolution: standard / high Figure 3.
Evaluation of the performance of the three methods. (a) SpeCond (blue), TSGA (purple), propensity method (cyan). (b,c) Detailed parameter evaluation for the SpeCond and TSGA methods. (b) SpeCond: varying
mlk (0 to 300) and rsd (0 to 2) parameters for the two steps with β = 6 and 0 and per = 0.1 and (0.2, 0.3,
0.5) for step 1 and step 2, respectively. The red line represents optimal parameter
set for each false positive (FP) rate. (c) TSGA for the maximum number of specific tissue that can be detected N = 1, 2, 3, 4,
8, 11, 16, varying the H.critical value from 1 to 19.8. TP: true positive.
Cavalli et al. Genome Biology 2011 12:R101 doi:10.1186/gb-2011-12-10-r101 |