Table 3

Genome and transcriptome assembly statistics

Genome

Transcriptome

All ^a)

With transcript ^a)

All

Representative

Total bases (+ gaps)

786.6 Mb

532.3 Mb

40.63 Mb

33.20 Mb

Total bases (- gaps)

534.0 Mb

366.9 Mb

40.63 Mb

33.20 Mb

Scaffold N50

16.2 Kb

24.9 Kb

1.80 Kb

1.91 Kb

Number of scaffolds

136,290

45,776

40,224

30,074

Largest scaffold

565.9 Kb

565.9 Kb

12.11 Kb

12.11 Kb

^a) Only scaffolds and unplaced contigs larger than 400 bp are included in the genome assembly statistics.

van Bakel et al. Genome Biology 2011 12:R102   doi:10.1186/gb-2011-12-10-r102