Table 3

Genome and transcriptome assembly statistics

Genome

Transcriptome



All a)

With transcript a)

All

Representative


Total bases (+ gaps)

786.6 Mb

532.3 Mb

40.63 Mb

33.20 Mb

Total bases (- gaps)

534.0 Mb

366.9 Mb

40.63 Mb

33.20 Mb

Scaffold N50

16.2 Kb

24.9 Kb

1.80 Kb

1.91 Kb

Number of scaffolds

136,290

45,776

40,224

30,074

Largest scaffold

565.9 Kb

565.9 Kb

12.11 Kb

12.11 Kb


a) Only scaffolds and unplaced contigs larger than 400 bp are included in the genome assembly statistics.

van Bakel et al. Genome Biology 2011 12:R102   doi:10.1186/gb-2011-12-10-r102

Open Data