Table 1 |
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|
Detection of depleted hairpins in reference depletion screens |
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|
Un-filtered |
Filtered |
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|
|
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|
Depletion |
Min FPR |
FNR |
Min FPR |
FNR |
|
|
||||
|
25% |
0.00% |
50.05% |
0.00% |
49.95% |
|
50% |
0.00% |
4.21% |
0.00% |
2.89% |
|
75% |
0.00% |
0.74% |
0.00% |
0.00% |
|
|
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|
The false positive and false negative rates at a range of log ratio thresholds were calculated by comparing each depletion group to the non-depleted hairpins. This was repeated for all hairpins and after filtering to exclude hairpins with low representation (<100 raw reads) in the reference set. The minimum false positive rate (Min FPR) found is shown along with the associated false negative rate (FNR). |
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|
Sims et al. Genome Biology 2011 12:R104 doi:10.1186/gb-2011-12-10-r104 |
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