Additional file 1.

Genome assembly and genome features of C. sinensis. Figure S1: 17-mer depth distribution of the sequencing reads. Figure S2: features of the assembled C. sinensis genome. Figure S3: distribution of heterozygosity in C. sinensis. Figure S4: protein domain analysis of C. sinensis, S. mansoni, and S. japonicum. Table S1: main features of C. sinensis genome sequencing data. Table S2: numbers of reads mapped to the assembled C. sinensis genome. Table S3: genome validation by PCR products. Table S4: genome validation by Sanger ESTs. Table S5: repeat composition of C. sinensis genome. Table S6: summary of predicted protein-coding genes by different methods. Table S7: statistics of the reliable gene set with homology, or functional annotation or putative full-length ORF support [95]. Table S8: numbers of homologous genes between the CEGMA set of 458 core eukaryotic genes and our gene models. Table S9: summary of gene families in several organisms. Table S10: summary of genes annotated by InterPro domains in several species. Table S11: summary of predicted non-coding RNA genes in the C. sinensis genome.

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Wang et al. Genome Biology 2011 12:R107   doi:10.1186/gb-2011-12-10-r107