Table 2 |
|||||
|
Genome-wide analysis of C. militaris gene sets. |
|||||
|
Characteristics |
C. militaris |
CMM corea |
CMA restrictedb |
CMC restrictedc |
CCM specific |
|
|
|||||
|
Number of genes |
9,684 |
7,981 |
217 |
158 |
1,328 |
|
Mean gene length (bp) |
1,742 |
1,885 |
1,445 |
1,440 |
967 |
|
Mean number of introns per gene |
1.99 |
2.05 |
1.77 |
1.69 |
1.71 |
|
Percentage genes without introns |
21.3 |
20.1 |
22.6 |
28.5 |
27.5 |
|
Percentage GC content (excluding introns) |
58.6 |
58.6 |
70.7 |
58.7 |
58.3 |
|
Number of InterproScan protein families |
2,644 |
2,552 |
69 |
52 |
112 |
|
Number of secreted proteins |
1,572 |
1,250 |
45 |
13 |
264 |
|
Number of PHI genesd |
1,547 |
1,539 |
4 |
2 |
2 |
|
Number of TSA proteases |
68 |
65 |
3 |
0 |
0 |
|
Number of MFS genes |
245 |
242 |
0 |
2 |
1 |
|
Number of cytochrome P450s |
57 |
56 |
0 |
1 |
0 |
|
Number of Pth11-like GPCRs |
18 |
18 |
0 |
0 |
0 |
|
Number of protein kinases |
167 |
167 |
0 |
0 |
0 |
|
Number of transcription factors |
123 |
120 |
2 |
1 |
0 |
|
Number of glycoside hydrolases |
105 |
103 |
2 |
0 |
0 |
|
Number of SM backbone genes |
28 |
28 |
0 |
0 |
0 |
|
Number of horizontally transferred genes |
49 |
30 |
5 |
1 |
12 |
|
Number of orthologs in M. anisopliae |
6,863 |
6,705 |
158 |
NA |
NA |
|
Number of orthologs in M. acridum |
6,762 |
6,644 |
NA |
118 |
NA |
|
Number of orthologs in F. graminearum |
6,740 |
6,376 |
106 |
89 |
169 |
|
Number of orthologs in M. oryzae |
6,219 |
5,937 |
90 |
80 |
112 |
|
Percentage identity to M. anisopliae orthologs |
63.4 |
63.7 |
51.3 |
NA |
NA |
|
Percentage identity to M. acridum orthologs |
63.4 |
63.6 |
NA |
51.2 |
NA |
|
Percentage identity to F. graminearum orthologs |
61.6 |
62.3 |
51.9 |
52.8 |
46.7 |
|
Percentage identity to M. oryzae orthologs |
56.0 |
56.4 |
48.3 |
48.0 |
45.3 |
|
|
|||||
|
aCMM core: C. militaris (CCM), M. anisopliae and M. acridum genes grouped with a cutoff E value of 1e-5 during reciprocal Blast analysis. bCMA restricted: C. militias and M. anisopliae restricted genes grouped with a cutoff E value of 1e-5. cCMC restricted: C. militaris and M. acridum restricted genes grouped at a cutoff E value of 1e-5. dPHI genes, pathogen-host interaction genes predicted by blast analysis against the PHI database [72]. Identity was estimated at the amino acid level. GPCR, G-protein coupled receptor; MFS, major facilitator superfamily; NA, not available; SM, secondary metabolite; TSA, trypsin, subtilisin and aspartyl protease. |
|||||
|
Zheng et al. Genome Biology 2011 12:R116 doi:10.1186/gb-2011-12-11-r116 |
|||||
