Table 2

HSF site distribution in Alu and non-Alu regions in heat shock responsive transcripts across the upstream 5-kb and genic regions

Region

HSF sites

Up-regulated

Down-regulated


Upstream

Alu + non-Alu

731

1,592

Exclusively in Alu

60

184

Exclusively in non-Alu

430

833

Genic

Alu + non-Alu

775

1,737

Exclusively in Alu

12

13

Exclusively in non-Alu

238

433


Pandey et al. Genome Biology 2011 12:R117   doi:10.1186/gb-2011-12-11-r117

Open Data