Table 5

GO classification of up-regulated transcripts with HSF sites present exclusively in Alu repeats in the upstream regions

Category

HSF site only in Alu

GO:0033554: cellular response to stress

SPDYA, ATP7A, SUMO1P3, SFPQ, FBXO6, EIF2B3, FANCB

GO:0006754: ATP biosynthetic process

ATP7A, ATP1B3, ATP11C

GO:0006325: chromatin organization

HIST1H2BC, HIST1H2BE, BPTF, SMARCAL1, HAT1, HIST1H3F

GO:0044265: cellular macromolecule catabolic process

PSMD12, ISG15, SUMO1P3, RNASET2, FBXO6, USP49, CNOT4

Pandey et al. Genome Biology 2011 12:R117   doi:10.1186/gb-2011-12-11-r117