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RNA-seq in grain unveils fate of neo- and paleopolyploidization events in bread wheat (Triticum aestivum L.)

Caroline Pont1, Florent Murat1, Carole Confolent1, Sandrine Balzergue2 and Jérôme Salse1*

Author Affiliations

1 INRA, UMR 1095, Genetics, Diversity and Ecophysiology of Cereals, 234 avenue du Brézet, 63100 Clermont-Ferrand, France

2 INRA, Unité de Recherches en Génomique Végétale, 2 rue Gaston Crémieux, CP 5708, F-91057 Evry Cedex, France

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Genome Biology 2011, 12:R119  doi:10.1186/gb-2011-12-12-r119

Published: 2 December 2011

Additional files

Additional file 1:

Supplemenraty tables. To support the use of the provided RNA-seq data, we provide eleven supplementary tables. Table S1: RNA-sequence quality and coverage features. Table S2: information on the 37,695 wheat sequence clusters. Table S3: the 17,881 homologs between wheat and Brachypodium/rice/sorghum/maize genomes. Table S4: the heterologous bread wheat expression map. Table S5: the SSCP analysis. Table S6: Brachypodium heat maps. Table S7: GO classification. Table S8: transcription factor data. Table S9: wheat Affymetrix experiment data. Table S10: the starch pathway analysis. Table S11: the structural/functional shuffling model. The provided supplementary tables provide access to the raw data (gene name, sequence, position, function, expression and statistical data) of the results detailed in the article.

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