Method
Improving RNA-Seq expression estimates by correcting for fragment bias
1 Department of Computer Science, 387 Soda Hall, UC Berkeley, Berkeley, CA 94720, USA
2 Broad Institute, 7 Cambridge Center, Cambridge, MA 02142, USA
3 Department of Stem Cell and Regenerative Biology, 7 Divinity Avenue, Harvard University, Cambridge, MA 02138, USA
4 Departments of Mathematics and Molecular & Cell Biology, 970 Evans Hall, UC Berkeley, Berkeley, CA 94720, USA
Genome Biology 2011, 12:R22 doi:10.1186/gb-2011-12-3-r22
Published: 16 March 2011Additional files
Additional file 1:
Supplementary figures. Additional figures referred to in the text.
Format: PDF Size: 1.7MB Download file
This file can be viewed with: Adobe Acrobat Reader
Additional file 2:
Raw expression data. Raw expression estimates used in comparisons, including the NanoString expression measurements.
Format: TGZ Size: 678KB Download file
Additional file 3:
Supplementary methods. More detail on the likelihood model.
Format: PDF Size: 134KB Download file
This file can be viewed with: Adobe Acrobat Reader
Additional file 4:
Script for mseq format conversion. Python script that converts standard SAM and FASTA input into the mseq input format.
Format: PY Size: 3KB Download file
