Table 4 |
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|
Genes affected by AZA treatment |
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|
19099 |
19141 |
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|
|
|
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|
Gene |
Transcript |
Location |
Untreated |
Treated |
Untreated |
Treated |
IBD |
Mapped to polymorphism |
|
|
||||||||
|
PCTK3 |
NM_212502 |
chr1:203742262-203768466 |
2.54 |
1.42 |
2.74 |
1.24 |
Yes |
|
|
CR1L |
NM_175710 |
chr1:205886352-205961039 |
2.21 |
1.38 |
2.20 |
1.49 |
Yes |
|
|
KCNK1 |
NM_002245 |
chr1:231822688-231871795 |
1.78 |
1.11 |
4.69 |
2.59 |
NI |
Yes |
|
- |
chr4:79778447-79803457 |
2.47 |
1.78 |
2.1 |
1.27 |
NA |
Yes |
|
|
- |
chr5:173100613-173139917 |
2.33 |
1.27 |
2.08 |
1.15 |
Yes |
||
|
- |
chr5:9599989-9600708 |
3.02 |
1.58 |
1.47 |
1.06 |
Yes |
||
|
- |
chr6:139658229-139733915 |
3.16 |
2.36 |
3.53 |
2.53 |
Yes |
Yes |
|
|
- |
chr6:80016628-80042343 |
3.16 |
2.36 |
2.71 |
1.25 |
NA |
||
|
CALN1 |
NM_001017440 |
chr7:71159735-71207121 |
1.51 |
1.05 |
5.76 |
1.76 |
NA |
|
|
- |
chr11:3036678-3063235 |
4.64 |
2.94 |
4.63 |
3.18 |
Yes |
Yes |
|
|
SYT9 |
NM_175733 |
chr11:7376868-7440901 |
2.09 |
1.31 |
3.48 |
2.15 |
Yes |
Yes |
|
VWA5A |
NM_001130142 |
chr11:123521934-123522703 |
2.02 |
1.37 |
2.12 |
1.37 |
Yes |
|
|
P2RX7 |
NM_002562 |
chr12:120055848-120087505 |
2.23 |
1.08 |
1.81 |
1.24 |
Yes |
|
|
COL4A2 |
NM_001846 |
chr13:109958305-109963202 |
3.25 |
1.5 |
2.58 |
1.84 |
Yes |
|
|
PRKCH |
NM_006255 |
chr14:60959560-61030659 |
2.17 |
1.64 |
1.92 |
1.43 |
Yes |
|
|
DNAJA4 |
NM_00130182 |
chr15:76345564-76360674 |
2.15 |
1.58 |
8.56 |
5.77 |
Yes |
|
|
- |
chr15:94684325-94711444 |
3.11 |
2.13 |
5.45 |
3.28 |
Yes |
||
|
GAS7 |
NM_001130831 |
chr17:10022884-10022981 |
4.24 |
2.21 |
2.13 |
1.44 |
Yes |
Yes |
|
- |
chr17:14190861-14192673 |
2.37 |
1.68 |
2.34 |
1.60 |
NI |
Yes |
|
|
C20orf194 |
NM_001009984 |
chr20:3179134-3334482 |
3.47 |
2.08 |
1.92 |
1.45 |
Yes |
|
|
- |
chr20:46050433-46119516 |
2.22 |
1.54 |
2.48 |
1.65 |
NA |
||
|
- |
chr20:46358273-46404570 |
2.06 |
1.27 |
3.15 |
1.59 |
NA |
Yes |
|
|
GNAS |
NR_002875 |
chr20:56848505-56882141 |
6.46 |
4.14 |
3.62 |
2.06 |
Yes |
|
|
TMPRSS3 |
NM_024022 |
chr21:42665938-42688945 |
1.47 |
1.04 |
4.19 |
1.43 |
Yes |
|
|
- |
chr22:28762403-28805154 |
1.43 |
1.03 |
4.25 |
2.23 |
Yes |
||
|
OSBP2 |
NM_030758 |
chr22:29598129-29633708 |
2.41 |
1.84 |
2.86 |
1.71 |
NI |
|
|
|
||||||||
|
IBD, identical-by-descent; NA, not available; NI, not informative. |
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|
Morcos et al. Genome Biology 2011 12:R25 doi:10.1186/gb-2011-12-3-r25 |
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