Table 5 |
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|
Genes not affected by treatment |
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|
19099 |
19141 |
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|
|
|
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|
Gene |
Transcript |
Location |
Untreated |
Treated |
Untreated |
Treated |
IBD |
Mapped to polymorphism |
|
|
||||||||
|
MARK1 |
NM_018650 |
chr1:218867493-218900613 |
6.38 |
6.26 |
Yes |
|||
|
DISC1 |
NM_001012957 |
chr1:229837731-230086433 |
4.64 |
4.85 |
Yes |
Yes |
||
|
CYP27A1 |
NM_000784 |
chr2:219372907-219379842 |
3.84 |
2.54 |
1.25 |
1.62 |
NI |
|
|
THNSL2 |
NM_018271 |
chr2:88252911-88265923 |
2.43 |
3.37 |
Yes |
Yes |
||
|
PTPRG |
NM_002841 |
chr3:62165281-62250653 |
4.02 |
3.09 |
3.65 |
5.10 |
NI |
|
|
UPK1B |
NM_006952 |
chr3:120375223-120399317 |
4.12 |
3.68 |
1.23 |
1.33 |
NI |
|
|
FAM53A |
NM_001013622 |
chr4:1654935-1655009 |
1.93 |
2.04 |
2.30 |
2.13 |
Yes |
|
|
EVC |
NM_153717 |
chr4:5767823-5801057 |
1.68 |
1.78 |
3.47 |
3.11 |
Yes |
|
|
- |
chr4:6698225-6722860 |
3.9 |
3.99 |
Yes |
Yes |
|||
|
- |
chr4:107011829-107032181 |
4.34 |
4.27 |
NI |
||||
|
- |
chr4:142529192-142768065 |
5.11 |
5.47 |
Yes |
Yes |
|||
|
ANKH |
NM_054027 |
chr5:14801236-14922709 |
1.42 |
1.35 |
7.59 |
8.63 |
Yes |
Yes |
|
- |
chr5:82347320-82386566 |
2.1 |
2.23 |
Yes |
Yes |
|||
|
- |
chr6:654765-656792 |
3.18 |
3.13 |
NA |
||||
|
MOXD1 |
NM_015529 |
chr6:132659162-132759924 |
2.02 |
2.08 |
3.07 |
3.03 |
Yes |
Yes |
|
- |
chr8:511306-580861 |
3.54 |
2.76 |
2.33 |
2.79 |
Yes |
Yes |
|
|
- |
chr9:5296824-5301171 |
3.83 |
3.91 |
Yes |
||||
|
DEC1 |
NM_017418 |
chr9:117025707-117204395 |
2.22 |
2.18 |
Yes |
Yes |
||
|
DIP2C |
NM_014974 |
chr10:363048-477973 |
3.56 |
2.48 |
1.25 |
1.73 |
Yes |
|
|
FRMD4A |
NM_018027 |
chr10:13817200-14106528 |
3.93 |
4.13 |
NA |
|||
|
- |
chr11:6879025-6898447 |
2.81 |
2.20 |
1.63 |
2.15 |
Yes |
Yes |
|
|
- |
chr11:70187425-70240934 |
2.73 |
2.13 |
1.52 |
1.83 |
NI |
||
|
- |
chr13:18766583-18804422 |
3.50 |
3.03 |
3.52 |
4.30 |
Yes |
Yes |
|
|
WDR51B |
NM_172240 |
chr12:88415605-88431297 |
2.18 |
2.27 |
2.66 |
2.62 |
Yes |
Yes |
|
- |
chr14:24047434-24096337 |
2.44 |
2.01 |
4.27 |
5.26 |
NI |
||
|
PAX9 |
NM_006194 |
chr14:36198687-36216226 |
1.98 |
1.51 |
2.06 |
2.63 |
Yes |
|
|
- |
chr14:69730226-69746414 |
5.76 |
5.81 |
NA |
||||
|
DPF3 |
NM_012074 |
chr14:72343297-72429399 |
1.83 |
2.39 |
3.30 |
2.29 |
Yes |
|
|
WARS |
NM_173701 |
chr14:99906106-99911812 |
2.49 |
2.41 |
Yes |
Yes |
||
|
- |
chr15:22775434-22933834 |
11.24 |
9.95 |
7.06 |
8.26 |
Yes |
||
|
- |
chr15:28921438-28971039 |
11.73 |
7.79 |
2.13 |
2.70 |
Yes |
Yes |
|
|
SV2B |
NM_014848 |
chr15:89614733-89637888 |
2.88 |
2.74 |
NI |
|||
|
- |
chr16:53974720-54069307 |
5.38 |
2.88 |
1.10 |
1.64 |
Yes |
Yes |
|
|
- |
chr16:83152950-83155553 |
3.52 |
3.6 |
NA |
||||
|
SLC13A5 |
NM_177550 |
chr17:6531791-6555012 |
3.75 |
3.89 |
NA |
|||
|
- |
chr17:34566422-34580691 |
2.65 |
2.28 |
1.56 |
1.78 |
NA |
||
|
PITPNC1 |
NM_181671 |
chr17:63031387-63046267 |
3.08 |
2.46 |
1.59 |
1.83 |
Yes |
|
|
DSC3 |
NM_024423 |
chr18:26824546-26875293 |
1.88 |
2.21 |
4.83 |
3.67 |
Yes |
Yes |
|
KATNAL2 |
NM_031303 |
chr18:42780796-42812910 |
1.97 |
1.83 |
2.41 |
2.60 |
NI |
|
|
- |
chr19:40008284-40033757 |
6.05 |
5.53 |
4.29 |
4.95 |
NI |
||
|
SIGLEC5 |
NM_003830 |
chr19:56807457-56823545 |
1.45 |
1.24 |
3.84 |
5.51 |
NI |
|
|
- |
chr19:58776466-58798723 |
3.02 |
3.32 |
Yes |
||||
|
- |
chr22:22567862-22619365 |
1.12 |
1.03 |
8.09 |
10.02 |
Yes |
Yes |
|
|
LDOC1L |
NM_032287 |
chr22:43268050-43270537 |
1.46 |
1.75 |
3.74 |
2.97 |
Yes |
|
|
|
||||||||
|
IBD, identical-by-descent; NA, not available; NI, not informative. |
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|
Morcos et al. Genome Biology 2011 12:R25 doi:10.1186/gb-2011-12-3-r25 |
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