Table 5

Genes not affected by treatment

19099

19141



Gene

Transcript

Location

Untreated

Treated

Untreated

Treated

IBD

Mapped to polymorphism


MARK1

NM_018650

chr1:218867493-218900613

6.38

6.26

Yes

DISC1

NM_001012957

chr1:229837731-230086433

4.64

4.85

Yes

Yes

CYP27A1

NM_000784

chr2:219372907-219379842

3.84

2.54

1.25

1.62

NI

THNSL2

NM_018271

chr2:88252911-88265923

2.43

3.37

Yes

Yes

PTPRG

NM_002841

chr3:62165281-62250653

4.02

3.09

3.65

5.10

NI

UPK1B

NM_006952

chr3:120375223-120399317

4.12

3.68

1.23

1.33

NI

FAM53A

NM_001013622

chr4:1654935-1655009

1.93

2.04

2.30

2.13

Yes

EVC

NM_153717

chr4:5767823-5801057

1.68

1.78

3.47

3.11

Yes

-

chr4:6698225-6722860

3.9

3.99

Yes

Yes

-

chr4:107011829-107032181

4.34

4.27

NI

-

chr4:142529192-142768065

5.11

5.47

Yes

Yes

ANKH

NM_054027

chr5:14801236-14922709

1.42

1.35

7.59

8.63

Yes

Yes

-

chr5:82347320-82386566

2.1

2.23

Yes

Yes

-

chr6:654765-656792

3.18

3.13

NA

MOXD1

NM_015529

chr6:132659162-132759924

2.02

2.08

3.07

3.03

Yes

Yes

-

chr8:511306-580861

3.54

2.76

2.33

2.79

Yes

Yes

-

chr9:5296824-5301171

3.83

3.91

Yes

DEC1

NM_017418

chr9:117025707-117204395

2.22

2.18

Yes

Yes

DIP2C

NM_014974

chr10:363048-477973

3.56

2.48

1.25

1.73

Yes

FRMD4A

NM_018027

chr10:13817200-14106528

3.93

4.13

NA

-

chr11:6879025-6898447

2.81

2.20

1.63

2.15

Yes

Yes

-

chr11:70187425-70240934

2.73

2.13

1.52

1.83

NI

-

chr13:18766583-18804422

3.50

3.03

3.52

4.30

Yes

Yes

WDR51B

NM_172240

chr12:88415605-88431297

2.18

2.27

2.66

2.62

Yes

Yes

-

chr14:24047434-24096337

2.44

2.01

4.27

5.26

NI

PAX9

NM_006194

chr14:36198687-36216226

1.98

1.51

2.06

2.63

Yes

-

chr14:69730226-69746414

5.76

5.81

NA

DPF3

NM_012074

chr14:72343297-72429399

1.83

2.39

3.30

2.29

Yes

WARS

NM_173701

chr14:99906106-99911812

2.49

2.41

Yes

Yes

-

chr15:22775434-22933834

11.24

9.95

7.06

8.26

Yes

-

chr15:28921438-28971039

11.73

7.79

2.13

2.70

Yes

Yes

SV2B

NM_014848

chr15:89614733-89637888

2.88

2.74

NI

-

chr16:53974720-54069307

5.38

2.88

1.10

1.64

Yes

Yes

-

chr16:83152950-83155553

3.52

3.6

NA

SLC13A5

NM_177550

chr17:6531791-6555012

3.75

3.89

NA

-

chr17:34566422-34580691

2.65

2.28

1.56

1.78

NA

PITPNC1

NM_181671

chr17:63031387-63046267

3.08

2.46

1.59

1.83

Yes

DSC3

NM_024423

chr18:26824546-26875293

1.88

2.21

4.83

3.67

Yes

Yes

KATNAL2

NM_031303

chr18:42780796-42812910

1.97

1.83

2.41

2.60

NI

-

chr19:40008284-40033757

6.05

5.53

4.29

4.95

NI

SIGLEC5

NM_003830

chr19:56807457-56823545

1.45

1.24

3.84

5.51

NI

-

chr19:58776466-58798723

3.02

3.32

Yes

-

chr22:22567862-22619365

1.12

1.03

8.09

10.02

Yes

Yes

LDOC1L

NM_032287

chr22:43268050-43270537

1.46

1.75

3.74

2.97

Yes


IBD, identical-by-descent; NA, not available; NI, not informative.

Morcos et al. Genome Biology 2011 12:R25   doi:10.1186/gb-2011-12-3-r25

Open Data