Table 1

Read counts and accession numbers of pyrosequencing datasets

Sequencesa


Site

Depth (m)

Data

Total

Non-rRNAb

Codingc

Accession


OMZ

50

DNA

393,403

340,117

204,953

SRX025906

RNA

379,333

117,760

42,327

SRX025907

85

DNA

595,662

567,772

341,350

SRX025908

RNA

184,386

69,200

16,960

SRX025909

110

DNA

403,227

380,057

215,217

SRX025910

RNA

557,762

268,093

81,492

SRX025911

200

DNA

516,426

485,044

274,463

SRX025912

RNA

441,273

149,699

39,218

SRX025913

BATS 216

20

DNA

357,882

343,370

223,563

SRX008032

RNA

511,525

334,507

124,832

SRX016882

50

DNA

464,652

423,258

244,638

SRX008033

RNA

365,838

263,811

91,489

SRX016883

100

DNA

525,606

498,222

305,260

SRX008035

RNA

519,951

334,037

129,369

SRX016884

HOT 186

25

DNA

623,559

596,902

331,347

SRX007372

RNA

561,821

252,586

113,664

SRX016893

75

DNA

995,747

654,106

363,459

SRX007369

RNA

557,718

199,416

55,545

SRX016897, SRX016896

110

DNA

473,166

458,260

237,759

SRX007370

RNA

398,436

135,452

34,644

This study, SRA028811

500

DNA

673,674

972,967

540,042

SRX007371

RNA

479,661

83,795

38,913

This study, sra028811

Soil

Surface

DNA

1,439,445

1,392,745

976,899

This study, sra028811

RNA

1,188,352

985,305

445,479

This study, sra028811


aGenerated on a Roche 454 GS FLX instrument. bAll non-rRNA reads; duplicate reads (reads sharing 100% nucleotide identity and length) excluded. cReads matching (bit score >50) protein-coding genes in the NCBI-nr database. BATS, Bermuda Atlantic Time Series; HOT, Hawaii Ocean Time Series; OMZ, oxygen minimum zone; rRNA, ribosomal RNA.

Stewart et al. Genome Biology 2011 12:R26   doi:10.1186/gb-2011-12-3-r26

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