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Table 1
Read counts and accession numbers of pyrosequencing datasets
			Sequences^a

Site	Depth (m)	Data	Total	Non-rRNA^b	Coding^c	Accession

OMZ	50	DNA	393,403	340,117	204,953	SRX025906
		RNA	379,333	117,760	42,327	SRX025907
	85	DNA	595,662	567,772	341,350	SRX025908
		RNA	184,386	69,200	16,960	SRX025909
	110	DNA	403,227	380,057	215,217	SRX025910
		RNA	557,762	268,093	81,492	SRX025911
	200	DNA	516,426	485,044	274,463	SRX025912
		RNA	441,273	149,699	39,218	SRX025913
BATS 216	20	DNA	357,882	343,370	223,563	SRX008032
		RNA	511,525	334,507	124,832	SRX016882
	50	DNA	464,652	423,258	244,638	SRX008033
		RNA	365,838	263,811	91,489	SRX016883
	100	DNA	525,606	498,222	305,260	SRX008035
		RNA	519,951	334,037	129,369	SRX016884
HOT 186	25	DNA	623,559	596,902	331,347	SRX007372
		RNA	561,821	252,586	113,664	SRX016893
	75	DNA	995,747	654,106	363,459	SRX007369
		RNA	557,718	199,416	55,545	SRX016897, SRX016896
	110	DNA	473,166	458,260	237,759	SRX007370
		RNA	398,436	135,452	34,644	This study, SRA028811
	500	DNA	673,674	972,967	540,042	SRX007371
		RNA	479,661	83,795	38,913	This study, sra028811
Soil	Surface	DNA	1,439,445	1,392,745	976,899	This study, sra028811
		RNA	1,188,352	985,305	445,479	This study, sra028811

^aGenerated on a Roche 454 GS FLX instrument. ^bAll non-rRNA reads; duplicate reads (reads sharing 100% nucleotide identity and length) excluded. ^cReads matching (bit score >50) protein-coding genes in the NCBI-nr database. BATS, Bermuda Atlantic Time Series; HOT, Hawaii Ocean Time Series; OMZ, oxygen minimum zone; rRNA, ribosomal RNA.
Stewart et al. Genome Biology 2011 12:R26 doi:10.1186/gb-2011-12-3-r26

Table 1