Table 5 |
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|
Proportion of reference taxon genes shared with sister taxon (that is, core gene set) |
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|
Taxona |
Number of CDSb |
Sister taxonc |
Percentage of cored |
|
|
|||
|
Alpha Proteobacterium HIMB114 |
1,425 |
Pelagibacter ubique HTCC1062 |
63 |
|
Ca. Kuenenia stuttgartiensis |
4,787 |
Planctomyces limnophilus DSM 3776 |
17 |
|
Nitrosopumilus maritimus |
1,796 |
Cenarchaeum symbiosium |
49 |
|
Ca. Pelagibacter sp. HTCC7211 |
1,447 |
Pelagibacter ubique HTCC1062 |
75 |
|
Ca. Pelagibacter ubique HTCC1002 |
1,423 |
Pelagibacter sp. HTCC7211 |
80 |
|
Ca. Pelagibacter ubique HTCC1062 |
1,354 |
Pelagibacter sp. HTCC7211 |
80 |
|
Prochlorococcus marinus AS9601 |
1,920 |
All Pro. strains |
68 |
|
Prochlorococcus marinus CCMP1375 |
1,883 |
All Pro. strains |
69 |
|
Prochlorococcus marinus MIT 9312 |
1,810 |
All Pro. strains |
72 |
|
Prochlorococcus marinus MIT9301 |
1,906 |
All Pro. strains |
67 |
|
Prochlorococcus marinus NATL1A |
2,193 |
All Pro. strains |
59 |
|
Prochlorococcus marinus NATL2A |
2,162 |
All Pro. strains |
59 |
|
Uncultured SUP05 cluster bacterium |
1,456 |
Ca. Ruthia magnifica |
52 |
|
Solibacter usitatus Ellin6076 |
7,826 |
Acidobacterium capsulatum ATCC 51196 |
22 |
|
Ca. Koribacter versatilis Ellin345 |
4,777 |
Acidobacterium capsulatum ATCC 51196 |
36 |
|
Acidobacterium capsulatum ATCC 51196 |
3,377 |
Solibacter usitatus Ellin6076 |
51 |
|
Bradyrhizobium japonicum USDA 110 |
8,317 |
Bradyrhizobium sp. BTAi1 |
49 |
|
Bacterium Ellin514 |
6,510 |
Verrucomicrobium spinosum DSM 4136 |
24 |
|
|
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|
aRepresentative taxon at high abundance in each sample. bNumber of CDS is the number of protein-coding genes in the sequenced reference genome of each taxon. cSister taxon used for identification of core genome (see main text). dPercentage of core is the percentage of protein-coding genes in each taxon that are shared with the sister taxon. CDS, coding sequence. |
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|
Stewart et al. Genome Biology 2011 12:R26 doi:10.1186/gb-2011-12-3-r26 |
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