Table 8 |
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|
Proportional changea in amino acid usage in RNA datasets compared to DNA datasets |
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|
Amino acid |
OMZ |
BATS 216 |
HOTS 186 |
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|
|
|||||||||||||
|
GCb |
50 m |
85 m |
110 m |
200 m |
20 m |
50 m |
100 m |
25 m |
75 m |
110 m |
500 m |
Soil |
|
|
|
|||||||||||||
|
Ala |
0.83 |
31.5 |
30.2 |
21.8 |
20.1 |
35.5 |
27.6 |
28.0 |
45.4 |
44.2 |
26.2 |
26.8 |
5.5 |
|
Gly |
0.83 |
26.8 |
24.7 |
17.8 |
16.4 |
18.7 |
16.1 |
16.7 |
19.0 |
23.4 |
14.4 |
-10.2 |
0.0 |
|
Pro |
0.83 |
11.0 |
11.7 |
3.3 |
7.4 |
13.1 |
6.6 |
8.7 |
10.1 |
2.4 |
4.0 |
6.8 |
5.1 |
|
Arg |
0.72 |
-3.3 |
-3.2 |
-11.7 |
1.8 |
23.2 |
14.2 |
9.7 |
11.9 |
0.9 |
4.1 |
-6.7 |
1.3 |
|
Trp |
0.67 |
34.0 |
49.5 |
27.0 |
21.2 |
12.2 |
9.2 |
11.9 |
18.2 |
25.7 |
17.1 |
-9.3 |
16.3 |
|
Cys |
0.50 |
-0.5 |
-5.1 |
-6.9 |
2.1 |
-2.6 |
-6.6 |
-9.5 |
-10.3 |
-8.9 |
-11.8 |
17.5 |
3.9 |
|
Asp |
0.50 |
3.3 |
5.6 |
0.9 |
8.0 |
3.0 |
-0.8 |
-0.2 |
-0.1 |
0.4 |
-2.0 |
-2.9 |
-3.6 |
|
Glu |
0.50 |
-7.0 |
-11.1 |
-2.4 |
2.8 |
0.7 |
-1.2 |
-1.0 |
-6.6 |
-8.9 |
-5.6 |
-21.7 |
-9.0 |
|
His |
0.50 |
-4.1 |
-5.4 |
-7.8 |
-0.6 |
4.1 |
-1.4 |
-3.4 |
9.7 |
0.9 |
-4.5 |
-28.3 |
2.9 |
|
Gln |
0.50 |
-1.3 |
1.3 |
-2.9 |
2.5 |
9.3 |
6.4 |
6.8 |
9.3 |
3.8 |
4.2 |
-10.8 |
-2.7 |
|
Ser |
0.50 |
-5.4 |
-2.8 |
-3.4 |
-2.9 |
-8.5 |
-7.4 |
-5.2 |
-7.6 |
-6.3 |
-2.0 |
6.4 |
4.1 |
|
Thr |
0.50 |
14.9 |
17.8 |
11.3 |
7.5 |
7.9 |
10.0 |
10.7 |
14.2 |
14.6 |
9.8 |
-17.4 |
1.3 |
|
Val |
0.50 |
17.7 |
18.8 |
12.2 |
11.5 |
16.0 |
15.0 |
13.2 |
18.1 |
20.2 |
11.4 |
7.5 |
-4.1 |
|
Leu |
0.39 |
-9.7 |
-11.0 |
-10.4 |
-8.1 |
-6.6 |
-6.7 |
-5.3 |
-7.2 |
-6.9 |
-2.2 |
7.8 |
4.4 |
|
Met |
0.33 |
14.2 |
20.0 |
7.6 |
6.6 |
13.0 |
14.5 |
6.1 |
17.5 |
20.3 |
5.3 |
-0.5 |
-1.6 |
|
Phe |
0.17 |
-10.5 |
-9.1 |
-6.9 |
-10.2 |
-15.9 |
-11.3 |
-9.6 |
-8.4 |
-5.8 |
-1.6 |
-3.6 |
4.3 |
|
Lys |
0.17 |
-22.3 |
-28.6 |
-9.5 |
-17.8 |
-13.7 |
-8.4 |
-6.6 |
-25.1 |
-23.4 |
-11.5 |
15.9 |
-26.3 |
|
Asn |
0.17 |
-23.6 |
-20.5 |
-14.8 |
-18.0 |
-25.1 |
-20.2 |
-19.2 |
-24.9 |
-23.0 |
-17.4 |
13.6 |
0.9 |
|
Tyr |
0.17 |
-8.4 |
-6.7 |
-5.3 |
-4.8 |
-15.2 |
-9.3 |
-11.0 |
-1.9 |
-5.6 |
-7.7 |
25.7 |
5.4 |
|
Ile |
0.11 |
-19.3 |
-21.8 |
-11.8 |
-18.2 |
-22.5 |
-18.2 |
-18.5 |
-23.0 |
-20.6 |
-17.5 |
-3.7 |
0.4 |
|
|
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|
a((Proportion in RNA) - (Proportion in DNA))/(Proportion in DNA) × 100. bGC content = (Number of guanine or cytosine bases among synonymous codons)/(Number of total bases among synonymous codons). BATS, Bermuda Atlantic Time Series; HOT, Hawaii Ocean Time Series; OMZ, oxygen minimum zone. |
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|
Stewart et al. Genome Biology 2011 12:R26 doi:10.1186/gb-2011-12-3-r26 |
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