Open Access Method

ISsaga is an ensemble of web-based methods for high throughput identification and semi-automatic annotation of insertion sequences in prokaryotic genomes

Alessandro M Varani*, Patricia Siguier, Edith Gourbeyre, Vincent Charneau and Mick Chandler*

Author Affiliations

Laboratoire de Microbiologie et Génétique Moléculaires, CNRS 118, Route de Narbonne, 31062 Toulouse Cedex, France

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Genome Biology 2011, 12:R30  doi:10.1186/gb-2011-12-3-r30

Published: 28 March 2011

Additional files

Additional file 1:

ISsaga user manual. A detailed explanation of the use of ISsaga and instructions concerning the correct system of annotation for insertion sequences.

Format: DOC Size: 5.2MB Download file

This file can be viewed with: Microsoft Word Viewer

Open Data

Additional file 2:

Figure S1 - annotation table. This shows a partially completed annotation table of Acaryochloris marina with its different fields necessary for a proper annotation. The boxes are automatically filled following validation of the ISs in the individual IS reports. Each field is clickable and editable.

Format: PDF Size: 194KB Download file

This file can be viewed with: Adobe Acrobat Reader

Open Data