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Dynamic reprogramming of chromatin accessibility during Drosophila embryo development

Sean Thomas1†, Xiao-Yong Li2†, Peter J Sabo1, Richard Sandstrom1, Robert E Thurman1, Theresa K Canfield1, Erika Giste1, William Fisher2, Ann Hammonds2, Susan E Celniker2, Mark D Biggin2 and John A Stamatoyannopoulos1*

  • * Corresponding author: John A Stamatoyannopoulos jstam@uw.edu

  • † Equal contributors

1 Department of Genome Sciences, University of Washington, Foege S310A, 1705 NE Pacific Street, Box 355065, Seattle, WA 98195, USA

2 Genomics and Life Sciences Divisions, Lawrence Berkeley National Laboratory, One Cyclotron Road, MS 84-171, Berkeley, California 94720, USA

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Genome Biology 2011, 12:R43 doi:10.1186/gb-2011-12-5-r43

Published: 11 May 2011

Additional files

Additional file 1:

Supplementary tables and figures.

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Open Data

Additional file 2:

FDR 1% DHSs in euchromatic DNA for stage 5, 9, 10, 11 and 14 embryos (related to Figures 1and 2). Genome coordinates of the 1% FDR DHSs at stages 5, 9, 10, 11 and 14.

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Additional file 3:

FDR 1% accessible regions in euchromatic DNA for stage 5, 9, 10, 11 and 14 embryos (related to Figures 1and 2). Genome coordinates of the intersection of 1% FDR accessible regions at stages 5, 9, 10, 11 and 14.

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Open Data

Additional file 4:

Developmentally dynamic domains in euchromatic DNA. Genome coordinates of DDDs from Figure 4.

Format: XLS Size: 63KB Download file

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Open Data