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EMIRGE: reconstruction of full-length ribosomal genes from microbial community short read sequencing data

Christopher S Miller1*, Brett J Baker12, Brian C Thomas1, Steven W Singer34 and Jillian F Banfield15*

Author Affiliations

1 Department of Earth and Planetary Science, University of California, Berkeley, 307 McCone Hall #4767, Berkeley, CA 94720, USA

2 Current address: Department of Geological Sciences, University of Michigan, 1100 N. University Ave, Ann Arbor, MI 48109, USA

3 Earth Sciences Division, Lawrence Berkeley National Laboratory, 1 Cyclotron Road, Mail Stop 90-R1116, Berkeley, CA 94720, USA

4 Deconstruction Division, Joint BioEnergy Institute, 5885 Hollis St, Emeryville, CA 94660, USA

5 Department of Environmental Science, Policy and Management, University of California, Berkeley, 336 Hilgard Hall, Berkeley, CA 94720, USA

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Genome Biology 2011, 12:R44  doi:10.1186/gb-2011-12-5-r44

Published: 19 May 2011

Additional files

Additional file 1:

FASTA formatted file containing EMIRGE-reconstructed sequences from the simple simulated microbial community.

Format: FASTA Size: 14KB Download file

Open Data

Additional file 2:

FASTA-formatted file containing EMIRGE-reconstructed sequences from the complex simulated microbial community.

Format: FASTA Size: 35KB Download file

Open Data

Additional file 3:

FASTA-formatted file containing EMIRGE-reconstructed sequences from the natural microbial community.

Format: FASTA Size: 16KB Download file

Open Data