Table 2

Putatively high-copy MITEs identified in the BESs and Sanger shot gun sequences using MUST pipeline

Length

Inverted repeat length

BES hits

Copy number estimate

SGS hits

Copy number estimate

AT%


MITE_1

358

26

542

~17,000

18

~17,200

68.80

MITE_2

190

19

140

~3,300

8

~3,100

68.70

MITE_3

516

47

394

~17,900

8

~11,300

75.20


Copy number estimates based on procedure of Hawkins et al. [50]. SGS, Sanger shot gun sequence.

Zuccolo et al. Genome Biology 2011 12:R48   doi:10.1186/gb-2011-12-5-r48

Open Data