Table 4

Statistics for cDNA sequences included in multi-library transcriptome assembly of 246,196 unigenes with lengths greater than 100 bp

Tissue - library name

Sequencing method

Number of reads

Unscreened reads

Total passing bases (MB)


Apical meristem - Atr12

454 FLX Titanium

794,746

688,305

201.90

Male flowers - Atr15

454 FLX Titanium

277,023

255,213

73.49

Old leaves - Atr14

454 FLX Titanium

280,097

260,563

73.49

Old stem - Atr13

454 FLX Titanium

259,431

238,156

68.70

Pre-meiotic female flower buds - Atr10

454 FLX GS

895,000

812,325

176.97

Pre-meiotic female flower bud - Atr02

Sanger

13,263

13,141

7.17

Pre-meiotic male flower bud - Atr01

Sanger

25,343

25,006

14.17

Root - Atr11

454 FLX GS

324,070

300,275

64.88

Stem - Atr16

454 FLX Titanium

410,098

388,436

120.03


Assemblies and raw data can be downloaded from the Ancestral Angiosperm Genome Project website [25]. A BLAST portal for the assembly is also available at the project website.

Zuccolo et al. Genome Biology 2011 12:R48   doi:10.1186/gb-2011-12-5-r48

Open Data