Additional file 2.

Figure S1 - simulated paired-end read multiplicity distributions for the human genome. The number of valid alignments against the Homo sapiens genome is reported as a proportion of the 2 × 106 randomly sampled PE reads used in alignment, varying fragment length (250, 500, 750, or 1,000 nucleotides) and read length (30, 60, 90, or 120 nucleotides). The proportion of read multiplicity averaged over reads of the same length is shown in each figure.

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Simola and Kim Genome Biology 2011 12:R55   doi:10.1186/gb-2011-12-6-r55