Genome sequence and global sequence variation map with 5.5 million SNPs in Chinese rhesus macaque
- Equal contributors
1 Beijing Genomics Institute-Shenzhen, Chinese Academy of Sciences, Shenzhen 518083, China
2 State Key Laboratory of Genetic Resources and Evolution, Kunming Institute of Zoology and Kunming Primate Research Center, Chinese Academy of Sciences, Kunming 650223, China
3 Graduate School of Chinese Academy of Sciences, Beijing 100039, China
4 Current address: Beijing Institute of Genomics, Chinese Academy of Sciences, Beijing 100029, China
Genome Biology 2011, 12:R63 doi:10.1186/gb-2011-12-7-r63Published: 6 July 2011
Additional file 1:
Tables S1 and S2 and Figures S1 to S3. Table S1: detailed summary of Chinese rhesus macaque resequencing data. Table S2: summary of the overlapping deletions with repeat elements. Figure S1: cumulative density of read counts for homozygous and heterozygous SNPs. Figure S2: hierarchical clustering of rhesus macaques. Figure S3: distribution of the 20 Chinese rhesus macaques used for SV polymorphism testing.
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Additional file 2:
Supplementary tables. Table S3: information for selected SVs and primers used for PCR and sequencing. Table S4: deletion length information. Table S5: SV status in Chinese macaque population.
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