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Genome sequence and global sequence variation map with 5.5 million SNPs in Chinese rhesus macaque

Xiaodong Fang1, Yanfeng Zhang23, Rui Zhang24, Lixin Yang23, Ming Li23, Kaixiong Ye2, Xiaosen Guo1, Jun Wang1* and Bing Su2*

Author Affiliations

1 Beijing Genomics Institute-Shenzhen, Chinese Academy of Sciences, Shenzhen 518083, China

2 State Key Laboratory of Genetic Resources and Evolution, Kunming Institute of Zoology and Kunming Primate Research Center, Chinese Academy of Sciences, Kunming 650223, China

3 Graduate School of Chinese Academy of Sciences, Beijing 100039, China

4 Current address: Beijing Institute of Genomics, Chinese Academy of Sciences, Beijing 100029, China

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Genome Biology 2011, 12:R63  doi:10.1186/gb-2011-12-7-r63

Published: 6 July 2011

Additional files

Additional file 1:

Tables S1 and S2 and Figures S1 to S3. Table S1: detailed summary of Chinese rhesus macaque resequencing data. Table S2: summary of the overlapping deletions with repeat elements. Figure S1: cumulative density of read counts for homozygous and heterozygous SNPs. Figure S2: hierarchical clustering of rhesus macaques. Figure S3: distribution of the 20 Chinese rhesus macaques used for SV polymorphism testing.

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Additional file 2:

Supplementary tables. Table S3: information for selected SVs and primers used for PCR and sequencing. Table S4: deletion length information. Table S5: SV status in Chinese macaque population.

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Additional file 3:

Table S6. SNPs in drug-target protein domains.

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