Table 2

Classification of probe sets with a present call in at least one of the five arrays of a single hypha

Category

Number of probe sets with a present call

Total number of probe sets

Percentage of probe sets present


01 Metabolism

550

3023

18.2

02 Energy

25

117

21.4

03 Cell cycle and dna processing

106

476

22.3

04 Transcription

116

715

16.2

05 Protein synthesis

75

241

31.1

06 Protein fate (folding, modification, destination)

148

616

24

08 Cellular transport and transport mechanisms

76

438

17.4

10 Cellular communication or signal transduction mechanism

31

179

17.3

11 Cell rescue, defense and virulence

52

267

19.5

13 Regulation of or interaction with cellular environment

8

73

11

14 Cell fate

15

104

14.4

25 Development (systemic)

6

26

23.1

29 Transposable elements, viral and plasmid proteins

12

62

19.4

30 Control of cellular organization

5

29

17.2

40 Sub-cellular localization

19

137

13.9

45 Tissue localization

1

2

50

63 Protein with binding function or co-factor requirement

1

2

50

67 Transport facilitation

5

44

11.4

99 Unclassified proteins

1,279

7,670

16.7

rRNA

6

8

75

tRNA

39

144

27.1


Classification of the 2,608 probe sets is based on class I FunCats as well as the non-FunCat categories tRNA and rRNA.

de Bekker et al. Genome Biology 2011 12:R71   doi:10.1186/gb-2011-12-8-r71

Open Data